|
Issue with retrain scANVI model
|
|
1
|
96
|
March 3, 2025
|
|
Issue with scVI model device
|
|
2
|
86
|
March 3, 2025
|
|
In which direction is the LCF calculated when using the function differential_expression?
|
|
1
|
56
|
March 2, 2025
|
|
GIMVI genes imputation
|
|
1
|
135
|
February 26, 2025
|
|
Function in scanvi that can help compute the probability of having a latent cell state given a cell type
|
|
1
|
89
|
February 26, 2025
|
|
Set of guidelines for SCVI and VisiumHD data
|
|
0
|
140
|
February 25, 2025
|
|
Differential Expression and Batch Correction
|
|
1
|
263
|
February 20, 2025
|
|
SOLO/scVI .train() error related to batch_size?
|
|
6
|
1410
|
February 20, 2025
|
|
Question about interpreting the DEGs associated with disease changes using MrVI
|
|
2
|
127
|
February 11, 2025
|
|
Ablating latent variables in LinearSCVI
|
|
3
|
100
|
February 6, 2025
|
|
TotalVI not fully integrating CITEseq cells with GEX and missing protein values
|
|
1
|
91
|
February 6, 2025
|
|
Differential gene expression shows very low raw_means
|
|
2
|
67
|
January 30, 2025
|
|
The mean of the the scVI ZINB model distribution (related to supplementary note 3)
|
|
4
|
130
|
January 29, 2025
|
|
How to appropriately transfer annotations from anndata to seurat
|
|
2
|
377
|
January 24, 2025
|
|
Best practice for handling custom points during SCVI training
|
|
4
|
92
|
January 24, 2025
|
|
Workflow to integrate dataset from two different species
|
|
1
|
155
|
January 21, 2025
|
|
Scvi embedding from Census API by CellxGene
|
|
1
|
66
|
January 20, 2025
|
|
Model cannot be initialized and return error
|
|
6
|
117
|
January 15, 2025
|
|
Error loading someone else's SCVI model: no such file (attr.pkl)
|
|
1
|
52
|
January 13, 2025
|
|
Impact of batch on TotalVI results
|
|
1
|
99
|
January 5, 2025
|
|
Differential expression analysis
|
|
4
|
971
|
January 5, 2025
|
|
What training datasets are used in the scVI pretrained model (version 2024-07-01)?
|
|
2
|
105
|
December 23, 2024
|
|
Issue with model.train() in scVI - Training Stuck at 0%
|
|
1
|
196
|
December 15, 2024
|
|
Train scVI on a sampled dataset
|
|
8
|
272
|
December 6, 2024
|
|
Error loading previously saved scVI model after updating packages / cloud environment
|
|
6
|
650
|
December 5, 2024
|
|
CUDA is available but Training scVI models is too slow
|
|
4
|
295
|
December 4, 2024
|
|
scVI: effect of unbalanced number of cells in batches
|
|
1
|
116
|
November 27, 2024
|
|
Zero value with scvi normalisation
|
|
1
|
54
|
November 27, 2024
|
|
Getting the parameters and their names of scVI
|
|
3
|
436
|
November 27, 2024
|
|
Scvi-tools: different DEGs when comparing same data
|
|
2
|
167
|
November 19, 2024
|