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scVI batch correction clusters all cells from sample in a circle (potential artifact)
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14
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369
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June 3, 2025
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Help on MultiVI for data modality
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1
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272
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May 16, 2025
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Protocol for model optimization (currently focused on MultiVI)
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3
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678
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May 14, 2025
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How to interpret reconstruction loss increase but elbo loss decrease on trained scvi and scanvi models
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1
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288
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May 11, 2025
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Nan values in the latent of scanvi_query
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1
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75
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April 23, 2025
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Modify gene identifiers stored in existing scVI model
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1
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82
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April 20, 2025
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Anndata Manager Store
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11
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227
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April 20, 2025
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Scvi package can't be installed into google colab?
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6
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151
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April 20, 2025
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Is the scVI model applicable to bulk RNA-seq data from cell lines?
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1
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206
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April 16, 2025
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Understanding scVI integration inside R with Seurat v5 & SCTransform
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1
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547
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April 6, 2025
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How to fix number of nodes used in HPC environment with scvi.train (via R & reticulate)?
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8
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128
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April 10, 2025
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Suggestions for training on xenium spatial transcriptomics dataset
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5
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364
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March 22, 2025
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Error when running scvi.data.add_dna_sequence
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1
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85
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March 18, 2025
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Scvi-tools solo return synthetic doublets
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3
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106
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March 18, 2025
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SysVI model and normalized expression
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1
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218
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March 15, 2025
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Scvi-tools and xenium
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7
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885
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March 13, 2025
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Unexpected exception formatting exception when prepare_query_anndata
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4
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276
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March 11, 2025
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DestVI: how to load a DestVI model that was saved as a pickle
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1
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89
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March 9, 2025
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Parameters in training model for integrating datasets with scVI in R
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13
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251
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March 9, 2025
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Understanding batch-corrected counts in scVI
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6
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730
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March 9, 2025
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Add new data to existing integration
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3
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198
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March 7, 2025
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Issue with retrain scANVI model
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1
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121
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March 3, 2025
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Issue with scVI model device
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2
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105
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March 3, 2025
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In which direction is the LCF calculated when using the function differential_expression?
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1
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69
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March 2, 2025
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GIMVI genes imputation
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1
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186
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February 26, 2025
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Function in scanvi that can help compute the probability of having a latent cell state given a cell type
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1
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106
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February 26, 2025
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Set of guidelines for SCVI and VisiumHD data
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0
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190
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February 25, 2025
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Differential Expression and Batch Correction
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1
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340
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February 20, 2025
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SOLO/scVI .train() error related to batch_size?
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6
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1457
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February 20, 2025
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Question about interpreting the DEGs associated with disease changes using MrVI
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2
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158
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February 11, 2025
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