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Resume training from model checkpoints
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1
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92
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March 18, 2022
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Loading external CITE-seq anndata with argument `mask_protein_batches`?
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1
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94
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March 11, 2022
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Train + Prediction Split
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6
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136
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March 7, 2022
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HVGs and model fit
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4
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214
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March 6, 2022
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Batch Integration Parameter Tuning
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1
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152
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March 2, 2022
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Overriding functions from submodule
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5
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97
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March 2, 2022
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How to formulate priors and model for the cell cycle in SCVI/Pyro?
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2
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133
|
March 2, 2022
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Docker Image scVI
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1
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109
|
March 1, 2022
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Labels_key not available for scvi.model.MULTIVI.setup_anndata()
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3
|
111
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March 1, 2022
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Usage of HVG in scVI
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12
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428
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March 1, 2022
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Protocol for model optimization (currently focused on MultiVI)
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2
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105
|
February 28, 2022
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Novel Model for Clustering Developmental Data (starting from scANVI)
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0
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121
|
January 26, 2022
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Sampling from conditional posterior of p(x_n | z_n, s_n, l_n, and covariates)
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1
|
91
|
February 28, 2022
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totalVI, peakVI, multiVI with scRNA-seq and scATAC-seq data
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1
|
115
|
February 28, 2022
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Thoughts on a more ~realistic tutorial?
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14
|
287
|
February 26, 2022
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Altering scANVI's Graphical Model
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1
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90
|
February 25, 2022
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scVI data set size runtime question
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4
|
220
|
February 18, 2022
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Reference mapping with MultiVI
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0
|
106
|
January 25, 2022
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|
Reference mapping with missing genes (vars) in SCVI / scANVI
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0
|
91
|
February 16, 2022
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|
totalVI tutorial of integration of CITE-seq datasets in R
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|
2
|
112
|
February 15, 2022
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Integrate multiple samples for paired multi-omics data
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|
1
|
106
|
February 15, 2022
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Set threshold for prediction labels
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1
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116
|
February 14, 2022
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|
Model complexity selection
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|
5
|
276
|
February 10, 2022
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Recovering protein from adata.obsm
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4
|
97
|
February 9, 2022
|
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SCVI input for soupX corrected data
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|
2
|
98
|
February 9, 2022
|
|
Integration and Normalize with Smartseq2 matrix by gene length (human)
|
|
2
|
149
|
February 7, 2022
|
|
Reproducing scVI
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|
2
|
125
|
February 6, 2022
|
|
Seed labeling vs Integration and label transfer: highly variable genes
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|
2
|
131
|
January 20, 2022
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|
The best practice for detecting differential gene expression between 2 types of samples
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|
2
|
186
|
January 20, 2022
|
|
Differential expression and differential accessibility with MultiVi
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|
3
|
159
|
January 19, 2022
|