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scVI with large datasets
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4
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177
|
September 24, 2024
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ZeroDivisionError using scvi-tools
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15
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117
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September 23, 2024
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Embedding number for visualization
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10
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60
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September 23, 2024
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scArches with multiple covariates
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9
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719
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September 22, 2024
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Ambient RNA removal before TotalVI?
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1
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41
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September 22, 2024
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scVI reproducibility seed issue
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4
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798
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September 19, 2024
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SCANVI: Label transfer from in vivo reference to in vitro model?
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4
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678
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September 15, 2024
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[Usage clarification] Should the .obs in query and reference be exactly the same?
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2
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24
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September 13, 2024
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How is the scArches scvi/scanvi pipeline different from the one on SCVI tutorials?
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0
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50
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September 13, 2024
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Weird UMAP after running scVI
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6
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190
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September 12, 2024
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Macbook M1 M2 mps acceleration with scVI
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7
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1431
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September 10, 2024
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What to do when the query dataset has different genes from the reference?
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4
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57
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September 4, 2024
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Autotune on custom model class
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4
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48
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August 30, 2024
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Doublet removal: solo model train error
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13
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88
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August 29, 2024
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Understanding `differential_expression()` and lvm-DE
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3
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54
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August 28, 2024
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Pre-defined validation data
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1
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24
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August 27, 2024
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SCVI and SCANVI for label transfer how to assess accuracy?
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3
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133
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August 20, 2024
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Error when using scVI.model.train
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2
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116
|
August 19, 2024
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Scvi - denoising single-cell/single-nucleus transcription data
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3
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197
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August 8, 2024
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scVI integration set batch_key and poor Umap result
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3
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151
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August 7, 2024
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Is the output of `get_normalized_expression` batch-corrected or not?
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2
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167
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August 5, 2024
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MrVI input and interpretation
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23
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1143
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July 31, 2024
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Benchmarking with scib-metrics: Graph Connectivity as a batch correction metric
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5
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83
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July 25, 2024
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AdversarialTrainingPlan in _trainingplans.py
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1
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12
|
July 23, 2024
|
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Different UMAPs for same dataset with scANVI
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6
|
105
|
July 22, 2024
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Differences in library sizes between reference and query
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3
|
59
|
July 22, 2024
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Integration with multiple categorical variable
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1
|
22
|
July 22, 2024
|
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Function 'sexp_as_cholmod_sparse' not provided by package 'Matrix'
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4
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367
|
July 21, 2024
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MrVI min cells per sample, cross tissue samples
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1
|
43
|
July 20, 2024
|
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Multithreading error
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|
1
|
222
|
July 16, 2024
|