|
Modify gene identifiers stored in existing scVI model
|
|
1
|
63
|
April 20, 2025
|
|
Anndata Manager Store
|
|
11
|
193
|
April 20, 2025
|
|
Scvi package can't be installed into google colab?
|
|
6
|
133
|
April 20, 2025
|
|
Is the scVI model applicable to bulk RNA-seq data from cell lines?
|
|
1
|
176
|
April 16, 2025
|
|
Understanding scVI integration inside R with Seurat v5 & SCTransform
|
|
1
|
481
|
April 6, 2025
|
|
How to fix number of nodes used in HPC environment with scvi.train (via R & reticulate)?
|
|
8
|
111
|
April 10, 2025
|
|
Suggestions for training on xenium spatial transcriptomics dataset
|
|
5
|
328
|
March 22, 2025
|
|
Error when running scvi.data.add_dna_sequence
|
|
1
|
82
|
March 18, 2025
|
|
Scvi-tools solo return synthetic doublets
|
|
3
|
91
|
March 18, 2025
|
|
SysVI model and normalized expression
|
|
1
|
197
|
March 15, 2025
|
|
Scvi-tools and xenium
|
|
7
|
819
|
March 13, 2025
|
|
Unexpected exception formatting exception when prepare_query_anndata
|
|
4
|
263
|
March 11, 2025
|
|
DestVI: how to load a DestVI model that was saved as a pickle
|
|
1
|
85
|
March 9, 2025
|
|
Parameters in training model for integrating datasets with scVI in R
|
|
13
|
196
|
March 9, 2025
|
|
Understanding batch-corrected counts in scVI
|
|
6
|
639
|
March 9, 2025
|
|
Add new data to existing integration
|
|
3
|
181
|
March 7, 2025
|
|
Issue with retrain scANVI model
|
|
1
|
107
|
March 3, 2025
|
|
Issue with scVI model device
|
|
2
|
96
|
March 3, 2025
|
|
In which direction is the LCF calculated when using the function differential_expression?
|
|
1
|
62
|
March 2, 2025
|
|
GIMVI genes imputation
|
|
1
|
173
|
February 26, 2025
|
|
Function in scanvi that can help compute the probability of having a latent cell state given a cell type
|
|
1
|
95
|
February 26, 2025
|
|
Set of guidelines for SCVI and VisiumHD data
|
|
0
|
176
|
February 25, 2025
|
|
Differential Expression and Batch Correction
|
|
1
|
313
|
February 20, 2025
|
|
SOLO/scVI .train() error related to batch_size?
|
|
6
|
1444
|
February 20, 2025
|
|
Question about interpreting the DEGs associated with disease changes using MrVI
|
|
2
|
146
|
February 11, 2025
|
|
TotalVI not fully integrating CITEseq cells with GEX and missing protein values
|
|
1
|
109
|
February 6, 2025
|
|
Differential gene expression shows very low raw_means
|
|
2
|
80
|
January 30, 2025
|
|
The mean of the the scVI ZINB model distribution (related to supplementary note 3)
|
|
4
|
148
|
January 29, 2025
|
|
How to appropriately transfer annotations from anndata to seurat
|
|
2
|
440
|
January 24, 2025
|
|
Best practice for handling custom points during SCVI training
|
|
4
|
108
|
January 24, 2025
|