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Shared cell types not mixing when integrating datasets from different species
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4
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317
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June 19, 2025
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SMART-seq and MARS-seq pipelines
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1
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164
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June 19, 2025
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Workflow advice for totalVI in CITE-seq Multiplexed data
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3
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234
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June 19, 2025
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Domain adaptation to pre-train batch correction model using paired data
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12
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401
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May 27, 2025
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Amortized LDA Topic Modeling - picking the right number of topics
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8
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328
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June 4, 2025
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scVI batch correction clusters all cells from sample in a circle (potential artifact)
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14
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454
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June 3, 2025
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Help on MultiVI for data modality
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1
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304
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May 16, 2025
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Protocol for model optimization (currently focused on MultiVI)
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3
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716
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May 14, 2025
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How to interpret reconstruction loss increase but elbo loss decrease on trained scvi and scanvi models
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1
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358
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May 11, 2025
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Nan values in the latent of scanvi_query
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1
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96
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April 23, 2025
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Modify gene identifiers stored in existing scVI model
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1
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116
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April 20, 2025
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Anndata Manager Store
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11
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311
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April 20, 2025
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Scvi package can't be installed into google colab?
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6
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181
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April 20, 2025
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Is the scVI model applicable to bulk RNA-seq data from cell lines?
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1
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241
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April 16, 2025
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Understanding scVI integration inside R with Seurat v5 & SCTransform
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1
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621
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April 6, 2025
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How to fix number of nodes used in HPC environment with scvi.train (via R & reticulate)?
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8
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182
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April 10, 2025
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Suggestions for training on xenium spatial transcriptomics dataset
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5
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433
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March 22, 2025
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Error when running scvi.data.add_dna_sequence
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1
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97
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March 18, 2025
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Scvi-tools solo return synthetic doublets
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3
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139
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March 18, 2025
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SysVI model and normalized expression
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1
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235
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March 15, 2025
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Scvi-tools and xenium
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7
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994
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March 13, 2025
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Unexpected exception formatting exception when prepare_query_anndata
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4
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317
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March 11, 2025
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DestVI: how to load a DestVI model that was saved as a pickle
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1
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107
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March 9, 2025
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Parameters in training model for integrating datasets with scVI in R
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13
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339
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March 9, 2025
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Understanding batch-corrected counts in scVI
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6
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938
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March 9, 2025
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Add new data to existing integration
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3
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240
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March 7, 2025
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Issue with retrain scANVI model
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1
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150
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March 3, 2025
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Issue with scVI model device
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2
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118
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March 3, 2025
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In which direction is the LCF calculated when using the function differential_expression?
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1
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93
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March 2, 2025
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GIMVI genes imputation
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1
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218
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February 26, 2025
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