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Integrating different tissues with scVI
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3
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140
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November 15, 2024
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Integration with or without covariate
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1
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71
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November 11, 2024
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scVI 21618 problem
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5
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239
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November 7, 2024
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Iteration consumes memory
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5
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66
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November 7, 2024
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Inconsistency of scvi/SOLO in predicting doublets?
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5
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36
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November 7, 2024
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Why totalvi can be used as denoising data?
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1
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48
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November 7, 2024
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Documentation for training with multiple GPUs
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4
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271
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November 6, 2024
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New scvi-tools version using SOLO returns probabilities, how to return logits like in version 1.1.2
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7
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109
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July 2, 2024
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Autotune failed due to "h5py objects cannot be pickled"
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4
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91
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October 23, 2024
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Transferring lables from refrence dataset to query dataset with a more diverse cell population using scANVI
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8
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123
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October 17, 2024
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SCANVI inferred cell types don't make sense
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1
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82
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October 17, 2024
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Using low precision matrix multiplication to boost performance
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6
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236
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October 17, 2024
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Model Training got only 2 epochs
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4
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146
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October 14, 2024
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Trouble integrating my dataset into a reference dataset
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16
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268
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October 11, 2024
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Is it possible to add extra covariate categories to a trained SCVI model?
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3
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72
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October 4, 2024
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Error in MrVI differential abundance
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1
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46
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September 27, 2024
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Scale for predicted vs observed plot in SCVI-SCANVI mapping?
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2
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28
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September 25, 2024
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scVI with large datasets
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4
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257
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September 24, 2024
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ZeroDivisionError using scvi-tools
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15
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129
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September 23, 2024
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Embedding number for visualization
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10
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67
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September 23, 2024
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scArches with multiple covariates
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9
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739
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September 22, 2024
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Ambient RNA removal before TotalVI?
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1
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54
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September 22, 2024
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scVI reproducibility seed issue
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4
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844
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September 19, 2024
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SCANVI: Label transfer from in vivo reference to in vitro model?
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4
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687
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September 15, 2024
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[Usage clarification] Should the .obs in query and reference be exactly the same?
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2
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26
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September 13, 2024
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How is the scArches scvi/scanvi pipeline different from the one on SCVI tutorials?
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0
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65
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September 13, 2024
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Weird UMAP after running scVI
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6
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239
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September 12, 2024
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What to do when the query dataset has different genes from the reference?
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4
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66
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September 4, 2024
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Autotune on custom model class
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4
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54
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August 30, 2024
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Doublet removal: solo model train error
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13
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106
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August 29, 2024
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