|
Shared cell types not mixing when integrating datasets from different species
|
|
4
|
310
|
June 19, 2025
|
|
SMART-seq and MARS-seq pipelines
|
|
1
|
156
|
June 19, 2025
|
|
Workflow advice for totalVI in CITE-seq Multiplexed data
|
|
3
|
229
|
June 19, 2025
|
|
Domain adaptation to pre-train batch correction model using paired data
|
|
12
|
379
|
May 27, 2025
|
|
Amortized LDA Topic Modeling - picking the right number of topics
|
|
8
|
296
|
June 4, 2025
|
|
scVI batch correction clusters all cells from sample in a circle (potential artifact)
|
|
14
|
438
|
June 3, 2025
|
|
Help on MultiVI for data modality
|
|
1
|
296
|
May 16, 2025
|
|
Protocol for model optimization (currently focused on MultiVI)
|
|
3
|
711
|
May 14, 2025
|
|
How to interpret reconstruction loss increase but elbo loss decrease on trained scvi and scanvi models
|
|
1
|
346
|
May 11, 2025
|
|
Nan values in the latent of scanvi_query
|
|
1
|
93
|
April 23, 2025
|
|
Modify gene identifiers stored in existing scVI model
|
|
1
|
103
|
April 20, 2025
|
|
Anndata Manager Store
|
|
11
|
277
|
April 20, 2025
|
|
Scvi package can't be installed into google colab?
|
|
6
|
174
|
April 20, 2025
|
|
Is the scVI model applicable to bulk RNA-seq data from cell lines?
|
|
1
|
233
|
April 16, 2025
|
|
Understanding scVI integration inside R with Seurat v5 & SCTransform
|
|
1
|
613
|
April 6, 2025
|
|
How to fix number of nodes used in HPC environment with scvi.train (via R & reticulate)?
|
|
8
|
174
|
April 10, 2025
|
|
Suggestions for training on xenium spatial transcriptomics dataset
|
|
5
|
421
|
March 22, 2025
|
|
Error when running scvi.data.add_dna_sequence
|
|
1
|
96
|
March 18, 2025
|
|
Scvi-tools solo return synthetic doublets
|
|
3
|
135
|
March 18, 2025
|
|
SysVI model and normalized expression
|
|
1
|
233
|
March 15, 2025
|
|
Scvi-tools and xenium
|
|
7
|
975
|
March 13, 2025
|
|
Unexpected exception formatting exception when prepare_query_anndata
|
|
4
|
304
|
March 11, 2025
|
|
DestVI: how to load a DestVI model that was saved as a pickle
|
|
1
|
104
|
March 9, 2025
|
|
Parameters in training model for integrating datasets with scVI in R
|
|
13
|
321
|
March 9, 2025
|
|
Understanding batch-corrected counts in scVI
|
|
6
|
875
|
March 9, 2025
|
|
Add new data to existing integration
|
|
3
|
229
|
March 7, 2025
|
|
Issue with retrain scANVI model
|
|
1
|
144
|
March 3, 2025
|
|
Issue with scVI model device
|
|
2
|
118
|
March 3, 2025
|
|
In which direction is the LCF calculated when using the function differential_expression?
|
|
1
|
86
|
March 2, 2025
|
|
GIMVI genes imputation
|
|
1
|
213
|
February 26, 2025
|