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Error with DefaultAssay in R when Integrating Data Using scvi-tools
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4
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127
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July 16, 2024
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Error when trying to use scvi.model.SCANVI.from_scvi_model
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2
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184
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July 12, 2024
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Any suggestions for speeding up model training (vae and solo) on M2 mac
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1
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216
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July 8, 2024
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Recommendation for transform_batch / categorical_covariate_keys to obtain "batch corrected" counts
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1
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152
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July 3, 2024
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N_samples ( refers to Monte Carlo sampling for each cell) setting in totalVI
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1
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61
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June 28, 2024
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Failing to import SCVI-tools modules: has AnnDatasetFromAnnData been replaced?
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2
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56
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June 27, 2024
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Error in py_call_impl(callable, call_args$unnamed, call_args$named)
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0
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253
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June 24, 2024
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The output of scANVI
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2
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138
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June 19, 2024
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Differential expression with scvi - batch correction?
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1
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248
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June 19, 2024
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Question about differential expression and the batch_correction usage
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0
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152
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June 7, 2024
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Best way to rank genes for GSEA analysis
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3
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822
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June 5, 2024
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Issues running the updated version of MrVI
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1
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175
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June 3, 2024
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mrVI hyperparameter tunning
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3
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314
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June 3, 2024
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SCVI tools with large datasets
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3
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652
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May 31, 2024
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Training split conditioned on batch_key
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3
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149
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May 22, 2024
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With `data_module`, how do I get the `adata_manager`?
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0
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74
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May 22, 2024
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Issue importing sysVI
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2
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214
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May 17, 2024
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Does a scvi model has something like pytorchs state_dict?
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2
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96
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May 17, 2024
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Generating gene expression from latent vectors
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1
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100
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May 15, 2024
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Insufficient batch correction for certain cell-types
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8
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370
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May 15, 2024
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Batch correction in reconstructed gene space
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5
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992
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May 9, 2024
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SOLO usage - batch, training, predicting
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8
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1210
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May 8, 2024
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Scvi.data.organize_multiome_anndatas with two big anndata objects
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1
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138
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May 3, 2024
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Scale by total protein counts before running totalVI (to eliminate a batch effect of having different sequencing depths)
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3
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111
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May 3, 2024
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Inquiry about Data Input and DE Analysis Details in scVI
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4
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241
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May 3, 2024
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Computing neighbors from X_scANVI representation
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5
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367
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April 26, 2024
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Early stopping debug
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1
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273
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April 26, 2024
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Confused about hyperparam tuning in scVI
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1
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282
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April 25, 2024
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Scvi model training after sub-clustering
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1
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202
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April 25, 2024
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scvi.model.SCVI input values
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1
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252
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April 23, 2024
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