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Integration with or without covariate
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1
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117
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November 11, 2024
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scVI 21618 problem
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5
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331
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November 7, 2024
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Iteration consumes memory
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5
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138
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November 7, 2024
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Inconsistency of scvi/SOLO in predicting doublets?
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5
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83
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November 7, 2024
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Why totalvi can be used as denoising data?
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1
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106
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November 7, 2024
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New scvi-tools version using SOLO returns probabilities, how to return logits like in version 1.1.2
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7
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165
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July 2, 2024
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Autotune failed due to "h5py objects cannot be pickled"
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4
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132
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October 23, 2024
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Transferring lables from refrence dataset to query dataset with a more diverse cell population using scANVI
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8
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205
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October 17, 2024
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SCANVI inferred cell types don't make sense
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1
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151
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October 17, 2024
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Using low precision matrix multiplication to boost performance
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6
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517
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October 17, 2024
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Model Training got only 2 epochs
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4
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296
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October 14, 2024
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Trouble integrating my dataset into a reference dataset
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16
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512
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October 11, 2024
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Is it possible to add extra covariate categories to a trained SCVI model?
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3
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164
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October 4, 2024
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Error in MrVI differential abundance
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1
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84
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September 27, 2024
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Scale for predicted vs observed plot in SCVI-SCANVI mapping?
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2
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53
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September 25, 2024
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scVI with large datasets
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4
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422
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September 24, 2024
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ZeroDivisionError using scvi-tools
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15
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200
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September 23, 2024
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Embedding number for visualization
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10
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197
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September 23, 2024
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scArches with multiple covariates
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9
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874
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September 22, 2024
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Ambient RNA removal before TotalVI?
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1
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95
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September 22, 2024
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scVI reproducibility seed issue
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4
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984
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September 19, 2024
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SCANVI: Label transfer from in vivo reference to in vitro model?
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4
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720
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September 15, 2024
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[Usage clarification] Should the .obs in query and reference be exactly the same?
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2
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63
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September 13, 2024
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How is the scArches scvi/scanvi pipeline different from the one on SCVI tutorials?
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0
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138
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September 13, 2024
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Weird UMAP after running scVI
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6
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382
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September 12, 2024
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What to do when the query dataset has different genes from the reference?
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4
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141
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September 4, 2024
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Autotune on custom model class
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4
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105
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August 30, 2024
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Doublet removal: solo model train error
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13
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258
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August 29, 2024
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Understanding `differential_expression()` and lvm-DE
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3
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207
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August 28, 2024
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Pre-defined validation data
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1
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52
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August 27, 2024
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