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Recommendation for transform_batch / categorical_covariate_keys to obtain "batch corrected" counts
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1
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188
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July 3, 2024
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N_samples ( refers to Monte Carlo sampling for each cell) setting in totalVI
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1
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77
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June 28, 2024
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Failing to import SCVI-tools modules: has AnnDatasetFromAnnData been replaced?
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2
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70
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June 27, 2024
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Error in py_call_impl(callable, call_args$unnamed, call_args$named)
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0
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295
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June 24, 2024
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The output of scANVI
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2
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161
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June 19, 2024
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Differential expression with scvi - batch correction?
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1
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289
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June 19, 2024
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Question about differential expression and the batch_correction usage
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0
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174
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June 7, 2024
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Best way to rank genes for GSEA analysis
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3
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920
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June 5, 2024
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Issues running the updated version of MrVI
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1
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191
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June 3, 2024
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mrVI hyperparameter tunning
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3
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327
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June 3, 2024
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SCVI tools with large datasets
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3
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803
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May 31, 2024
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Training split conditioned on batch_key
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3
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167
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May 22, 2024
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With `data_module`, how do I get the `adata_manager`?
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0
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78
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May 22, 2024
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Issue importing sysVI
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2
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263
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May 17, 2024
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Does a scvi model has something like pytorchs state_dict?
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2
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103
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May 17, 2024
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Generating gene expression from latent vectors
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1
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111
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May 15, 2024
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Insufficient batch correction for certain cell-types
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8
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455
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May 15, 2024
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Batch correction in reconstructed gene space
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5
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1022
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May 9, 2024
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SOLO usage - batch, training, predicting
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8
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1310
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May 8, 2024
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Scvi.data.organize_multiome_anndatas with two big anndata objects
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1
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161
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May 3, 2024
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Scale by total protein counts before running totalVI (to eliminate a batch effect of having different sequencing depths)
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3
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123
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May 3, 2024
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Inquiry about Data Input and DE Analysis Details in scVI
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4
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282
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May 3, 2024
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Computing neighbors from X_scANVI representation
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5
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419
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April 26, 2024
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Early stopping debug
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1
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329
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April 26, 2024
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Confused about hyperparam tuning in scVI
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1
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357
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April 25, 2024
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Scvi model training after sub-clustering
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1
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232
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April 25, 2024
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scvi.model.SCVI input values
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1
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323
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April 23, 2024
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Environment recipes for scVI autotune and scIB-metrics Benchmarker
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0
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135
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April 7, 2024
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scRNA-seq batch correction for DestVI
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2
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177
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April 3, 2024
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Interpreting model history curves
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1
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481
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March 23, 2024
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