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SCVI and SCANVI for label transfer how to assess accuracy?
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3
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287
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August 20, 2024
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Error when using scVI.model.train
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2
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188
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August 19, 2024
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Scvi - denoising single-cell/single-nucleus transcription data
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3
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321
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August 8, 2024
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scVI integration set batch_key and poor Umap result
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3
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280
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August 7, 2024
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Is the output of `get_normalized_expression` batch-corrected or not?
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2
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321
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August 5, 2024
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MrVI input and interpretation
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23
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1500
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July 31, 2024
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Benchmarking with scib-metrics: Graph Connectivity as a batch correction metric
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5
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197
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July 25, 2024
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AdversarialTrainingPlan in _trainingplans.py
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1
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35
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July 23, 2024
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Different UMAPs for same dataset with scANVI
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6
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283
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July 22, 2024
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Differences in library sizes between reference and query
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3
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142
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July 22, 2024
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Integration with multiple categorical variable
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1
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46
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July 22, 2024
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Function 'sexp_as_cholmod_sparse' not provided by package 'Matrix'
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4
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564
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July 21, 2024
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MrVI min cells per sample, cross tissue samples
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1
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83
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July 20, 2024
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Multithreading error
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1
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330
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July 16, 2024
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Error with DefaultAssay in R when Integrating Data Using scvi-tools
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4
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205
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July 16, 2024
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Any suggestions for speeding up model training (vae and solo) on M2 mac
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1
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368
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July 8, 2024
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Recommendation for transform_batch / categorical_covariate_keys to obtain "batch corrected" counts
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1
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226
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July 3, 2024
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N_samples ( refers to Monte Carlo sampling for each cell) setting in totalVI
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1
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97
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June 28, 2024
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Failing to import SCVI-tools modules: has AnnDatasetFromAnnData been replaced?
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2
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101
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June 27, 2024
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Error in py_call_impl(callable, call_args$unnamed, call_args$named)
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0
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319
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June 24, 2024
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The output of scANVI
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2
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209
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June 19, 2024
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Differential expression with scvi - batch correction?
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1
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336
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June 19, 2024
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Question about differential expression and the batch_correction usage
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0
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196
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June 7, 2024
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Best way to rank genes for GSEA analysis
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3
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1009
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June 5, 2024
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Issues running the updated version of MrVI
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1
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241
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June 3, 2024
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mrVI hyperparameter tunning
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3
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368
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June 3, 2024
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SCVI tools with large datasets
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3
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913
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May 31, 2024
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Training split conditioned on batch_key
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3
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199
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May 22, 2024
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With `data_module`, how do I get the `adata_manager`?
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0
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99
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May 22, 2024
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Issue importing sysVI
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2
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290
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May 17, 2024
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