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Failure to remove a batch_key/ effect of number of LVs
|
|
6
|
376
|
February 9, 2024
|
|
Scvi and subtyping
|
|
1
|
356
|
February 9, 2024
|
|
How to save intermediate checkpoints?
|
|
3
|
387
|
February 3, 2024
|
|
Using a model with categorical_covariate_key instead of batch_key
|
|
2
|
482
|
February 1, 2024
|
|
GIMVI, label specification for single cell and spatial data
|
|
0
|
222
|
January 28, 2024
|
|
Preparing data for training of a classifier while preserving biological signal
|
|
0
|
150
|
January 27, 2024
|
|
Label Transfer Discrepancy in scANVI Model Training
|
|
2
|
370
|
January 22, 2024
|
|
Differential expression and rarely expressed genes
|
|
1
|
249
|
January 20, 2024
|
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Encountering Error in Label Transfer : Query Dataset Slightly Larger than Reference Dataset
|
|
3
|
250
|
January 11, 2024
|
|
scVI dropout, need for it?
|
|
2
|
234
|
January 10, 2024
|
|
Attribute Error while training simplescvi on tutorial lung data. Differences to full scvi?
|
|
2
|
193
|
January 9, 2024
|
|
Adding cycle consistency loss and VampPrior to scVI
|
|
2
|
142
|
January 9, 2024
|
|
Denoising/remove ambient RNA with scAR then scvi modeling?
|
|
3
|
476
|
January 6, 2024
|
|
Interpretation and visualization of MrVI output?
|
|
1
|
262
|
January 6, 2024
|
|
Clustering on the scVI latent space generates only gray-colored cells
|
|
4
|
232
|
December 24, 2023
|
|
Kernel dies when training simple SCVI on mac m3
|
|
1
|
254
|
December 20, 2023
|
|
How to use normalised expression
|
|
0
|
534
|
December 19, 2023
|
|
MultiVI error on only paired data
|
|
3
|
437
|
December 19, 2023
|
|
Predicting of unassigned cells using scANVI
|
|
0
|
256
|
December 10, 2023
|
|
Error running ModelTuner.fit
|
|
5
|
471
|
December 8, 2023
|
|
scVI integration with all genes
|
|
0
|
280
|
December 5, 2023
|
|
Suggestion on parameters for training scvi model
|
|
3
|
1456
|
December 4, 2023
|
|
scPoli implementation in dcvi-tools
|
|
2
|
147
|
December 1, 2023
|
|
When mutli-gpu support is planned on scanvi?
|
|
3
|
234
|
December 1, 2023
|
|
Nested batch effects with scvi
|
|
3
|
333
|
November 29, 2023
|
|
Scvi for developmental data
|
|
4
|
232
|
November 29, 2023
|
|
Compatibility between scVI and SCENIC
|
|
10
|
641
|
November 28, 2023
|
|
MultiVI size factor for multiple modalities
|
|
0
|
204
|
November 24, 2023
|
|
Setting num_workers in DataLoader for improving train performance
|
|
2
|
2159
|
November 21, 2023
|
|
Error in Fine-tuning scANVI Hyperparameters from Pretrained scVI Model
|
|
2
|
378
|
November 20, 2023
|