|
Does a scvi model has something like pytorchs state_dict?
|
|
2
|
136
|
May 17, 2024
|
|
Generating gene expression from latent vectors
|
|
1
|
146
|
May 15, 2024
|
|
Insufficient batch correction for certain cell-types
|
|
8
|
544
|
May 15, 2024
|
|
Batch correction in reconstructed gene space
|
|
5
|
1059
|
May 9, 2024
|
|
SOLO usage - batch, training, predicting
|
|
8
|
1411
|
May 8, 2024
|
|
Scvi.data.organize_multiome_anndatas with two big anndata objects
|
|
1
|
198
|
May 3, 2024
|
|
Scale by total protein counts before running totalVI (to eliminate a batch effect of having different sequencing depths)
|
|
3
|
174
|
May 3, 2024
|
|
Inquiry about Data Input and DE Analysis Details in scVI
|
|
4
|
331
|
May 3, 2024
|
|
Computing neighbors from X_scANVI representation
|
|
5
|
465
|
April 26, 2024
|
|
Early stopping debug
|
|
1
|
385
|
April 26, 2024
|
|
Confused about hyperparam tuning in scVI
|
|
1
|
399
|
April 25, 2024
|
|
Scvi model training after sub-clustering
|
|
1
|
285
|
April 25, 2024
|
|
scvi.model.SCVI input values
|
|
1
|
387
|
April 23, 2024
|
|
Environment recipes for scVI autotune and scIB-metrics Benchmarker
|
|
0
|
161
|
April 7, 2024
|
|
scRNA-seq batch correction for DestVI
|
|
2
|
203
|
April 3, 2024
|
|
Interpreting model history curves
|
|
1
|
542
|
March 23, 2024
|
|
Remove outliers from trained scVI model
|
|
3
|
198
|
March 23, 2024
|
|
Questions about reference mapping
|
|
1
|
389
|
March 23, 2024
|
|
Extracting Normalized Expression from Trained Model on Variable Subset
|
|
2
|
229
|
March 14, 2024
|
|
Access to each training example's original index in the input Anndata object
|
|
0
|
139
|
March 12, 2024
|
|
How to interpret the latent space in scVI
|
|
6
|
1543
|
March 5, 2024
|
|
Explicit Access to the Training Set During scVI Training
|
|
0
|
140
|
March 4, 2024
|
|
Unexpected Effect of Augmentations on scVI Batch Integration
|
|
0
|
356
|
March 2, 2024
|
|
Scvi performance on nvidia h100 vs a100
|
|
4
|
286
|
March 1, 2024
|
|
Incorporating augmentations (per batch) for scVI training
|
|
11
|
442
|
February 28, 2024
|
|
Loading model.pt in R
|
|
0
|
123
|
February 21, 2024
|
|
Reloading saved model gives different results
|
|
7
|
492
|
February 20, 2024
|
|
Clustering with X_scVI after removing doublets
|
|
0
|
187
|
February 20, 2024
|
|
Preserving biological variability in scVI sample integration
|
|
4
|
1012
|
February 16, 2024
|
|
Trouble with scvi environment from reticulate in R to run seurat pipeline
|
|
1
|
619
|
February 16, 2024
|