Is it possible to return the synthetic doublets with solo. I would like to be able to run pca on my adata with the synthetic doublets and visualize what my cell clusters look like relative to the stimulated doublets.
Yes I believe using SOLO in the regular way on your adata and color your PCA clusters based on the SOLO prediction will do the trick.
I believe SOLO_prediction just tells you which cells in your data were classified as being doublets. I would like to be able to visualize the simulated doublet that get generated in order to determine that the cells in my data are doublets
Hi, model.adata should contain also the synthetic doublets?