Cell Rank Data Set requirements

Ecosystem cellrank
1

Dear scverse team,
I just saw the cellrank tool, and find it very interesting and exciting!

I would like to apply it to one of the data sets and have two questions to the experts:

  1. Does the data need to be in a specific format? Which RNA count data in the h5ad object is used - the processed or the raw counts or? Basically the question is how applicable is it to ‘any’ dataset?

  2. Any objections/ concerns around single cell and single nuclei data sets? Or doesnt it matter?

Thanks a lot and looking forward to your input,
best wishes,
Simon

2

Hi Simon, thanks for your question.
Re 1, please check out our CellRank tutorials, we explain that in there.
Re 2, this is an scVelo question, please go through open/closed scVelo issues to find your answer.

Best wishes
Marius