Hello! i’m replicating the Teaseq analysis tutorial but i can’t load the fragments file cause I don’t have the index file, it’s not on GEO
do you have a recommended workaround to read the fragment file without the index, even if it means avoiding using pysam?
pysam.TabixFile(adata.uns["files"]["fragments"], parser=pysam.asBed())
if you have the index though (or a suggested route to generate the index) i’d also appreciate that
thanks!