Muon CITE-Seq analysis

Help muon
1

Hi! Trying to follow the Muon tutorial, I get stuck on: pt.pp.dsb(mdata, raw=mdata_raw, empty_droplets=droplets)

NameError: name ‘droplets’ is not defined

Can anyone help?

2

Hey @LivR,

In the original CITE-seq tutorial, the interface of this function is demonstrated to require empty_counts_range provided using the log10umi scale.
We might change this in future versions to enable providing exact barcodes (which would be more flexible I believe) but that’s currently the interface. So there’s no argument empty_droplets at the moment. :smiley: