Hi! Trying to follow the Muon tutorial, I get stuck on: pt.pp.dsb(mdata, raw=mdata_raw, empty_droplets=droplets)
NameError: name ‘droplets’ is not defined
Can anyone help?
Hi! Trying to follow the Muon tutorial, I get stuck on: pt.pp.dsb(mdata, raw=mdata_raw, empty_droplets=droplets)
NameError: name ‘droplets’ is not defined
Can anyone help?
Hey @LivR,
In the original CITE-seq tutorial, the interface of this function is demonstrated to require empty_counts_range
provided using the log10umi
scale.
We might change this in future versions to enable providing exact barcodes (which would be more flexible I believe) but that’s currently the interface. So there’s no argument empty_droplets
at the moment.