Get input corpus form AmortizedLDA model

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1

Thank you for making this useful module to scvi and the detailed tutorial. Are there any way to fetch the input corpus went into the model?

Thanks,
Shams

2

Hi, thank you for using scvi-tools. I’m not sure if I’m following your question, are you referring to the anndata that the model is trained on?

3

Hi @martinkim0,
Sorry for the confusion, formated count matrix that went to the model.

4

You should be able to access the count matrix by retrieving model.adata.X, or model.adata.layers["your_layer"] depending on how the input AnnData was set up with the model.

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