I’m moving from using scvelo to veloVI for RNA velocity analysis and I had a question about how the specification of the dynamical model compares. There is an option in scvelo recover dynamics to fit_basal_transcription, is there a similar option in veloVI?
Related topics
Topic | Replies | Views | Activity | |
---|---|---|---|---|
RNA velocity - pancreas dataset preprocessing | 0 | 490 | August 31, 2022 | |
Trajectory analysis of combined single-cell and single-nuclei data | 1 | 271 | September 2, 2024 | |
Using scVI-integrated data for scVelo and CellRank analysis - what embeddings to supply for velocity? | 3 | 527 | May 11, 2023 | |
Different Latent Time between scvi and harmony integrated datasets | 5 | 707 | June 17, 2021 | |
Adding cycle consistency loss and VampPrior to scVI | 2 | 139 | January 9, 2024 |