Can I use scvi-tools to integrate spatial transcriptomics datasets ?
What kind of integration do you want to do? You could ignoring the spatial information and integrating like normal?
I wanna integration different spatial datasets without regard to the spaital coordinates, just like what scvi do on single cell datasets.
cell2location integration different spatial datasets using bbknn, so I wnna know if I can use scvi-tools. There is a close relation between cell2location and scvi.
Yes, this is what I mean. I want to ignore the spatial information and integrate like normal. Could I use scvi-tools for this purpose ?