totalVI tutorial of integration of CITE-seq datasets in R

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1

Hi,

I understand that there is a CITE-seq analysis in R tutorial and in principle other totalVI features can be used as well.

Is there a tutorial that shows integration of two CITE-seq datasets in R using totalVI?

2

Not exactly, but you could in principle combine the commands seen in this tutorial:

https://docs.scvi-tools.org/en/stable/tutorials/notebooks/scvi_in_R.html#Integrating-datasets-with-scVI

With the one in the python totalVI tutorial:

https://docs.scvi-tools.org/en/stable/tutorials/notebooks/totalVI.html

3

Okay, thanks! Will try that.