CITEsq loading in RNA and ADT data

[bennjmo]

Help concatenating var for cite seq

I have a CITE seq experiment where the GEX and antibody capture were mapped separately, so that I have to load in two different matrices. adata_adt = sc.read_10x_mtx( "data/CITESeq_381/", gex_only = False ) adata_gex = sc.read_10x_mtx( "data/GEX_381/filtered_feature_bc_matrix/", gex_only = True ) I subset to only cells with GEX and ADT common_cells = np.intersect1d(adata_adt.obs_names, adata_gex.obs_names) adata_adt = adata_adt[common_cells] adata_gex = adata_gex[common_cells…