|
Unbalanced cell types and transform_batch
|
|
3
|
127
|
April 22, 2022
|
|
All genes or highly variable genes?
|
|
10
|
316
|
March 31, 2022
|
|
SCVI hyperparameter optimization
|
|
1
|
125
|
March 28, 2022
|
|
Resume training from model checkpoints
|
|
1
|
93
|
March 18, 2022
|
|
HVGs and model fit
|
|
4
|
215
|
March 6, 2022
|
|
Batch Integration Parameter Tuning
|
|
1
|
153
|
March 2, 2022
|
|
How to formulate priors and model for the cell cycle in SCVI/Pyro?
|
|
2
|
133
|
March 2, 2022
|
|
Docker Image scVI
|
|
1
|
109
|
March 1, 2022
|
|
Usage of HVG in scVI
|
|
12
|
429
|
March 1, 2022
|
|
scVI data set size runtime question
|
|
4
|
222
|
February 18, 2022
|
|
SCVI input for soupX corrected data
|
|
2
|
98
|
February 9, 2022
|
|
Reproducing scVI
|
|
2
|
126
|
February 6, 2022
|
|
Input to scvi encoder
|
|
2
|
135
|
December 7, 2021
|
|
Clustering subsets of cells
|
|
3
|
231
|
November 15, 2021
|
|
scVI - environment management
|
|
3
|
153
|
November 5, 2021
|
|
Calculating log-likelihood for scVI (and possibly other models)
|
|
4
|
271
|
September 15, 2021
|
|
Models for handling hundreds of batches
|
|
4
|
504
|
September 8, 2021
|
|
Scvi-tools with multiple GPUs
|
|
2
|
263
|
August 11, 2021
|
|
Pass scvi models to interpretation algorithm for downstream analysis
|
|
1
|
145
|
July 15, 2021
|
|
Assessing scVI fit by gene
|
|
3
|
183
|
June 23, 2021
|
|
Different Latent Time between scvi and harmony integrated datasets
|
|
5
|
180
|
June 17, 2021
|
|
scVI imputation confusion
|
|
1
|
182
|
June 16, 2021
|
|
scvi.model.SCVI parameters
|
|
4
|
215
|
June 16, 2021
|
|
Resuming training with scVI
|
|
2
|
243
|
November 12, 2020
|