Function 'sexp_as_cholmod_sparse' not provided by package 'Matrix'
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4
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330
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July 21, 2024
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Error with DefaultAssay in R when Integrating Data Using scvi-tools
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4
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115
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July 16, 2024
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The output of scANVI
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2
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127
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June 19, 2024
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Differential expression with scvi - batch correction?
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1
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223
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June 19, 2024
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Question about differential expression and the batch_correction usage
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0
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141
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June 7, 2024
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Best way to rank genes for GSEA analysis
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3
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792
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June 5, 2024
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Training split conditioned on batch_key
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3
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145
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May 22, 2024
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Issue importing sysVI
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2
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189
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May 17, 2024
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Generating gene expression from latent vectors
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1
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93
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May 15, 2024
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Insufficient batch correction for certain cell-types
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8
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348
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May 15, 2024
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Scvi.data.organize_multiome_anndatas with two big anndata objects
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1
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130
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May 3, 2024
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Inquiry about Data Input and DE Analysis Details in scVI
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4
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232
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May 3, 2024
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Computing neighbors from X_scANVI representation
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5
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344
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April 26, 2024
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Benchmarking CellHint with scib-metrics Benchmarker tool how to use embedding_obsm_keys
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1
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142
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April 25, 2024
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Confused about hyperparam tuning in scVI
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1
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259
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April 25, 2024
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Scvi model training after sub-clustering
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1
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183
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April 25, 2024
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scvi.model.SCVI input values
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1
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222
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April 23, 2024
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SOLO/scVI .train() error related to batch_size?
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3
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1166
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April 3, 2024
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TCR and BCR genes and HVGs selection
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5
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194
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April 3, 2024
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Issues setting up anndata for SCVI
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2
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355
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April 2, 2024
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Remove outliers from trained scVI model
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3
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162
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March 23, 2024
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Normalized data found instead of raw counts
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2
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588
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March 18, 2024
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Extracting Normalized Expression from Trained Model on Variable Subset
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2
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156
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March 14, 2024
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Access to each training example's original index in the input Anndata object
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0
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122
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March 12, 2024
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How to interpret the latent space in scVI
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6
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994
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March 5, 2024
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Explicit Access to the Training Set During scVI Training
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0
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112
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March 4, 2024
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Unexpected Effect of Augmentations on scVI Batch Integration
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0
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329
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March 2, 2024
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Incorporating augmentations (per batch) for scVI training
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11
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337
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February 28, 2024
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Reloading saved model gives different results
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7
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347
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February 20, 2024
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Preserving biological variability in scVI sample integration
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4
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616
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February 16, 2024
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