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DestVI gene imputation comparison between slides
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|
0
|
323
|
March 11, 2023
|
|
totalVI, peakVI, multiVI with scRNA-seq and scATAC-seq data
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|
3
|
871
|
March 9, 2023
|
|
Scvi importing problems
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|
3
|
708
|
March 9, 2023
|
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Don't extend labels for query data
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|
1
|
334
|
March 6, 2023
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Mini-batching error after registering MuData .varm field with custom scvi-tools model
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1
|
319
|
March 1, 2023
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Model which can work on binary data
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1
|
295
|
February 27, 2023
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How to interpret vae.train() progress bar?
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1
|
396
|
February 23, 2023
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Which values do you use to visualise gene expression?
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3
|
1423
|
February 21, 2023
|
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Kernel dying when using scvi to train a model (m1 mac)
|
|
0
|
449
|
February 21, 2023
|
|
Scib_metrics run time
|
|
5
|
772
|
February 19, 2023
|
|
Minimum number of cells for scVI?
|
|
2
|
408
|
February 15, 2023
|
|
scVI access the model
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4
|
532
|
February 9, 2023
|
|
Scvi-toools based model does not log metrics on every step
|
|
3
|
473
|
February 5, 2023
|
|
Transform_batch parameter of scVI's get_normalized_expression
|
|
2
|
911
|
January 28, 2023
|
|
Differential expression filtering in scVI
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|
0
|
363
|
January 26, 2023
|
|
Log metrics from a Pyro model
|
|
2
|
286
|
January 26, 2023
|
|
Ambient RNA Filtering with scAR prior to scVI
|
|
1
|
810
|
January 23, 2023
|
|
Re-integrate after removing low-quality cells?
|
|
2
|
606
|
January 23, 2023
|
|
Writing/reading scANVI model error?
|
|
3
|
1128
|
January 23, 2023
|
|
Multiple training sets with scVI?
|
|
1
|
431
|
January 20, 2023
|
|
"Vanilla" vs "Change" Mode in Differential Expression
|
|
2
|
402
|
January 17, 2023
|
|
Dimensionality reduction of 10x visium spatial datasets
|
|
1
|
507
|
January 15, 2023
|
|
Error when using 'get_normalized_expression'
|
|
0
|
412
|
January 5, 2023
|
|
DestVI scRNA-seq considerations
|
|
3
|
430
|
January 5, 2023
|
|
Is it possible to do second round integration via X_normalized_scVI normalized counts?
|
|
0
|
403
|
January 5, 2023
|
|
Selection of HVG in scVI
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|
3
|
1322
|
December 20, 2022
|
|
About VAE._regular_inference()
|
|
3
|
510
|
December 19, 2022
|
|
Cannot transfer setup without `extend_categories = True`
|
|
2
|
1323
|
December 15, 2022
|
|
DE between conditions in a cluster
|
|
4
|
656
|
December 14, 2022
|
|
Reference mapping with missing genes (vars) in SCVI / scANVI
|
|
1
|
933
|
December 10, 2022
|