I have scRNA-seq data already analysed by Scanpy. I want to do DE analysis by scvi.
So, I did:
adata.layers['counts'] = adata.X.copy()
scvi.model.SCVI.setup_anndata(adata, layer = "counts")
model = scvi.model.SCVI(adata)
model.train()
and I got this error
TypeError: Instance and class checks can only be used with @runtime_checkable protocols
Many thanks