Topics tagged scvi

Topic	Replies	Views	Activity
Import scvi error scvi-tools scvi	0	288	July 25, 2023
Generate cell expression from latent space directly scvi-tools scvi	2	528	June 26, 2023
Using categorical_covariate_keys when sampling or generating normalised expression scvi-tools scvi	6	716	June 26, 2023
Debugging Issue for CITE-seq analysis with totalVI juytper notebook tutorial scvi-tools scvi , developer , totalvi	6	244	June 21, 2023
Debugging Issue for Introduction to scvi-tools juytper notebook tutorial scvi-tools scvi	0	318	June 13, 2023
Not sure if scvi is using my GPU or not scRNA-seq integration , scvi	7	758	June 13, 2023
CellAssign speed up scvi-tools scvi , cellassign	2	323	June 13, 2023
404 Not Found Link in "Introduction to scvi-tools" walkthrough scvi-tools scvi	1	128	June 12, 2023
Struggling on under standing the parameter when clustering and cell type annotation. Also confused on normalization method scvi-tools scvi	0	388	June 6, 2023
Validation loss lower than the training loss in scvi scvi-tools integration , scvi	7	784	June 7, 2023
Clustering with scVI latent space scRNA-seq clustering , scvi	1	326	May 26, 2023
DE analysis with model.SCVI: which lfc indicates gene up-/down-regulation? scvi-tools scvi , diff-exp	2	756	September 15, 2022
Extract cell name from scvi dataset Help scvi	2	168	May 11, 2023
scArches with multiple covariates scvi-tools scarches , integration , scvi	3	424	May 5, 2023
Working with Multiple samples with PEAKVI scvi-tools scvi , peakvi , scatac-seq	1	433	May 5, 2023
Dataset integration and analysis scvi-tools totalvi , scvi , integration , multivi , cellassign	3	587	May 3, 2023
Analyse sub-sections of a spatial visium slide scanpy scvi	0	275	April 28, 2023
Choosing a Batch Key scvi-tools integration , scvi	2	612	April 18, 2023
_base_model.load() throwing weird errors when loading saved model scvi-tools scvi	4	241	April 10, 2023
No unique function for adata.obs scanpy scvi	1	376	April 7, 2023
About model.differential analysis scvi-tools diff-exp , scvi	0	238	March 26, 2023
Tuning/setting scvi.model.SCVI parameters scvi-tools scvi	9	1194	March 25, 2023
DE analysis between two batch-specific clusters scvi-tools scvi , diff-exp	9	540	March 24, 2023
How to specify batch correction for 7 samples from two bacthes? scvi-tools scvi	2	331	March 15, 2023
Mini-batching error after registering MuData .varm field with custom scvi-tools model scvi-tools developer , scvi	1	246	March 1, 2023
How to interpret vae.train() progress bar? scvi-tools scvi	1	318	February 23, 2023
Minimum number of cells for scVI? scvi-tools scvi	2	267	February 15, 2023
scVI access the model scvi-tools scvi , integration , developer	4	352	February 9, 2023
Unstable result scvi-tools scvi	0	253	February 1, 2023
Transform_batch parameter of scVI's get_normalized_expression scvi-tools scvi	2	474	January 28, 2023