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SOLO/scVI .train() error related to batch_size?
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6
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1349
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February 20, 2025
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scVelo between conditions
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0
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22
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February 20, 2025
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Really hard to plot categories palette
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1
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56
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February 14, 2025
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Help with harmony and scanpy
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3
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632
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February 14, 2025
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I have always had a question: do I need to scale my adata before running sc.tl.score_genes?
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4
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1019
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February 14, 2025
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Pertpy: AttributeError: module 'pertpy.plot' has no attribute 'coda'
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5
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672
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February 14, 2025
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Dealing with multiple samples
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9
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879
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February 13, 2025
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Question about interpreting the DEGs associated with disease changes using MrVI
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2
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86
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February 11, 2025
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Ablating latent variables in LinearSCVI
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3
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54
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February 6, 2025
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Weird output combat integration two datasets
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2
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51
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February 6, 2025
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TotalVI not fully integrating CITEseq cells with GEX and missing protein values
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1
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52
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February 6, 2025
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How to deal with negative logfoldchange in dotplot
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0
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45
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February 6, 2025
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Lazy loading of Zarr from S3
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3
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84
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January 30, 2025
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Differential gene expression shows very low raw_means
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2
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47
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January 30, 2025
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The mean of the the scVI ZINB model distribution (related to supplementary note 3)
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4
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67
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January 29, 2025
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How to concatenate andata objects when you have citeseq data
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5
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76
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January 29, 2025
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Tensor nan error when training scANVI model
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6
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792
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January 29, 2025
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How to appropriately transfer annotations from anndata to seurat
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2
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280
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January 24, 2025
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Best practice for handling custom points during SCVI training
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4
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68
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January 24, 2025
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Integrating TRUST4 outputs into anndata GEX
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3
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58
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January 22, 2025
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Workflow to integrate dataset from two different species
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1
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123
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January 21, 2025
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Scvi embedding from Census API by CellxGene
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1
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39
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January 20, 2025
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Cropping spatialdata to extent of shapes
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2
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87
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January 20, 2025
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How to convert R matrix to anndata
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4
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115
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January 17, 2025
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Using squidpy following scRNAseq and spatialRNASeq integration with scanorama and scanpy
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0
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30
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January 17, 2025
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Model cannot be initialized and return error
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6
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77
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January 15, 2025
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Error loading someone else's SCVI model: no such file (attr.pkl)
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1
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35
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January 13, 2025
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Does the order of HTOs matter?
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0
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33
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January 7, 2025
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Impact of batch on TotalVI results
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1
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78
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January 5, 2025
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Differential expression analysis
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4
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857
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January 5, 2025
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