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Welcome to the scverse discourse!
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3
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1590
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December 9, 2020
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Scanpy write compression vs os compression
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1
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14
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June 28, 2025
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Problems with Bayes factors and LFC changes using model.differential_expression()
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7
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127
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June 27, 2025
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Does MultiVI support using tile matrix directly instead of peak calling for ATAC input?
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0
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4
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June 25, 2025
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Understanding NMF output "mean_nUMI_factorsfact"
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0
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3
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June 24, 2025
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Wrong log-fold change estimation?
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0
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16
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June 24, 2025
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Deconvolute spatial transcriptomics (visium) with unannotated single-cell (10x)
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0
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5
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June 24, 2025
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Unexpected DE test results in scvi version 1.3.0 (as compared with version 1.1.2)
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10
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117
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June 23, 2025
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Shared cell types not mixing when integrating datasets from different species
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4
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28
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June 19, 2025
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Preprocess of scATAC use for peakVI or MultiVI
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2
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14
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June 19, 2025
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SMART-seq and MARS-seq pipelines
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1
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23
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June 19, 2025
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Workflow advice for totalVI in CITE-seq Multiplexed data
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3
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40
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June 19, 2025
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Regressing out isotype controls
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4
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788
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June 6, 2025
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How can I change the color of the "groupby" labels from a dotplot?
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0
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11
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June 4, 2025
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Domain adaptation to pre-train batch correction model using paired data
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12
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89
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May 27, 2025
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Amortized LDA Topic Modeling - picking the right number of topics
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8
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84
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June 4, 2025
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scVI batch correction clusters all cells from sample in a circle (potential artifact)
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14
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81
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June 3, 2025
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Popv AssertionError: Don’t call _normalize_index with non-categorical/string names
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1
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25
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May 31, 2025
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Macbook M1 M2 mps acceleration with scVI
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9
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1577
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May 30, 2025
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Discrepancy between raw mean/non-zero proportion and LFC with model.differential_expression
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0
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20
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May 29, 2025
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Lazy Loading Anndata backed in Zarr Arrays from Disk
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5
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64
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May 28, 2025
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Efficient pseudobulking
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4
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95
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May 28, 2025
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Unexplained change in UMAP
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3
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55
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May 27, 2025
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Spatialdata.aggregate, image and segmentation_mask have different shape, but aligned in 'global'
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1
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33
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May 26, 2025
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Reference levels Milo pertpy
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2
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17
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May 26, 2025
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Use of raw or log-normalised counts in decoupler-py mt.ulm
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0
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19
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May 26, 2025
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Sc.pp.highly_variable_genes with batch_key causes segmentation fault
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2
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213
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May 26, 2025
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Good spatial tutorial for beginners
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3
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110
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May 21, 2025
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Preprocessing CITE-seq with muon
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0
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16
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May 19, 2025
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Help on MultiVI for data modality
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1
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186
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May 16, 2025
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