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Welcome to the scverse discourse!
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3
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1622
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December 9, 2020
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How to run cellflow faster?
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0
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6
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August 7, 2025
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Using ResolVI’s Unsupervised Mode for Cell Annotation
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6
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18
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August 7, 2025
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How to Correct for Intra-Organ Batch Effects Without Removing Inter-Organ Differences?
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6
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21
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August 5, 2025
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Can we use resolVI and squidpy to annotate a CosMX object based on a single cell reference?
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1
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24
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August 3, 2025
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Conduct SCANVI after running SysVI on multi-platform data
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3
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22
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August 3, 2025
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Anchor-based integration methods
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0
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8
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August 1, 2025
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How to filter out specific cell types in spatialdata similar to anndata?
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1
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56
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August 1, 2025
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SpatialData workflow
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0
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25
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August 1, 2025
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Harmony-R vs Harmony-Py
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0
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29
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July 31, 2025
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How to handle batch effects within the query dataset when using scArches + SCVI?
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1
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29
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July 31, 2025
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Unexpected DE test results in scvi version 1.3.0 (as compared with version 1.1.2)
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15
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212
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July 31, 2025
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Implementing Warmup to a component based on epoch
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2
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14
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July 31, 2025
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RESOLVI - continuous_covariate_keys
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0
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16
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July 24, 2025
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Error when trying to use scvi.model.SCANVI.from_scvi_model
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7
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238
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July 22, 2025
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multiVI speed and cpu consumption
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1
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24
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July 16, 2025
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How could `adata.raw.X` contain non-integer values?
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2
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47
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July 13, 2025
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Cell hashing analysis using muon
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1
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47
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July 12, 2025
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Problems with Bayes factors and LFC changes using model.differential_expression()
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8
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180
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July 9, 2025
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Wrong log-fold change estimation?
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3
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52
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July 9, 2025
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Discrepancy between raw mean/non-zero proportion and LFC with model.differential_expression
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2
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39
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July 10, 2025
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Deconvolute spatial transcriptomics (visium) with unannotated single-cell (10x)
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3
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35
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July 10, 2025
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Does MultiVI support using tile matrix directly instead of peak calling for ATAC input?
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2
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33
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July 9, 2025
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DestVI.from_rna_model RuntimeError: Error(s) in loading state_dict for FCLayers
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1
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15
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July 9, 2025
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The best practice for detecting differential gene expression between 2 types of samples
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4
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895
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July 9, 2025
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Documentation for training with multiple GPUs
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5
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311
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July 9, 2025
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Cellxgene datasets raw data? scaled?
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2
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30
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July 8, 2025
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Scanpy write compression vs os compression
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1
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30
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June 28, 2025
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Understanding NMF output "mean_nUMI_factorsfact"
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0
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17
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June 24, 2025
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Shared cell types not mixing when integrating datasets from different species
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4
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65
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June 19, 2025
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