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Welcome to the scverse discourse!
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3
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1560
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December 9, 2020
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Unexpected DE test results in scvi version 1.3.0 (as compared with version 1.1.2)
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7
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60
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May 16, 2025
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Reference levels Milo pertpy
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0
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1
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May 16, 2025
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Good spatial tutorial for beginners
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2
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78
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May 16, 2025
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Help on MultiVI for data modality
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1
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159
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May 16, 2025
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Protocol for model optimization (currently focused on MultiVI)
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3
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516
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May 14, 2025
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Sc.pp.highly_variable_genes with batch_key causes segmentation fault
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1
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193
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May 14, 2025
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Spatialdata.aggregate, image and segmentation_mask have different shape, but aligned in 'global'
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0
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4
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May 14, 2025
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How to interpret reconstruction loss increase but elbo loss decrease on trained scvi and scanvi models
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1
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17
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May 11, 2025
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Amortized LDA Topic Modeling - picking the right number of topics
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3
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31
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May 11, 2025
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Convert anndata to seurat (spatial)
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1
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15
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May 9, 2025
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Mu.pp.intersect_obs()
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7
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84
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May 9, 2025
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Domain adaptation to pre-train batch correction model using paired data
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6
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28
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May 4, 2025
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Do multiple pairwise comparison with scCODA of pertpy
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3
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15
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May 4, 2025
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Problems with Bayes factors and LFC changes using model.differential_expression()
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5
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65
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April 30, 2025
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Nan values in the latent of scanvi_query
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1
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15
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April 23, 2025
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Modify gene identifiers stored in existing scVI model
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1
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23
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April 20, 2025
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Anndata Manager Store
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11
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41
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April 20, 2025
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Scvi package can't be installed into google colab?
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6
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28
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April 20, 2025
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How to retreive the V,D,J gene segment idenifiers and CD3 sequence give a clone_id?
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1
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15
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April 18, 2025
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Workflow advice for totalVI in CITE-seq Multiplexed data
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1
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19
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April 17, 2025
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Is the scVI model applicable to bulk RNA-seq data from cell lines?
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1
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32
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April 16, 2025
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Memory Usage in multiple New Formats
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0
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21
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April 13, 2025
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Best Practices for Multi-Panel Figures
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0
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31
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April 11, 2025
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Unexplained change in UMAP
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0
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29
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April 11, 2025
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Lazy Loading Anndata backed in Zarr Arrays from Disk
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4
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52
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April 11, 2025
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How to transfer annotation from cell subset to original object?
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1
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32
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April 10, 2025
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How to plot annotation in Xenium data using spatialdata
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8
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86
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April 10, 2025
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How should I calculate the knn entropy using the leiden clusters?
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1
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22
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April 10, 2025
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Understanding scVI integration inside R with Seurat v5 & SCTransform
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1
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69
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April 6, 2025
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