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Insufficient batch correction for certain cell-types
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8
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154
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May 15, 2024
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Reproducing scib-metrics usage after API change
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0
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15
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May 14, 2024
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Scvi.data.organize_multiome_anndatas with two big anndata objects
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1
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46
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May 3, 2024
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Benchmarking CellHint with scib-metrics Benchmarker tool how to use embedding_obsm_keys
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1
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62
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April 25, 2024
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Scvi model training after sub-clustering
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1
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91
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April 25, 2024
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scvi.model.SCVI input values
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1
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63
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April 23, 2024
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Anndata.concat([a,b], join="inner") does not behave as a.concat(b)
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0
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49
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April 8, 2024
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Issues setting up anndata for SCVI
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2
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122
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April 2, 2024
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Remove outliers from trained scVI model
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3
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103
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March 23, 2024
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Issues running the updated version of MrVI
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0
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83
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March 18, 2024
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Access to each training example's original index in the input Anndata object
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0
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76
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March 12, 2024
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Integration of Multiple Multiome Datasets
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5
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397
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March 6, 2024
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Explicit Access to the Training Set During scVI Training
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0
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77
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March 4, 2024
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Unexpected Effect of Augmentations on scVI Batch Integration
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0
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260
|
March 2, 2024
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Can I use the package scib-metrics on methods that don't output an embedding?
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2
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118
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February 27, 2024
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Preserving biological variability in scVI sample integration
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4
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262
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February 16, 2024
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Batch correction using scvI on multiple datasets + hyperparameter tuning of an scvI model
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1
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144
|
February 16, 2024
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Failure to remove a batch_key/ effect of number of LVs
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6
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195
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February 9, 2024
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Scvi and subtyping
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1
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174
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February 9, 2024
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How to compare different parameter sets using the validation loss?
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3
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204
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January 31, 2024
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Preparing data for training of a classifier while preserving biological signal
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0
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106
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January 27, 2024
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[Network inferences] Predicting cell-cell and cell-protein interactions using multiomics data?
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0
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102
|
January 20, 2024
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Attribute Error while training simplescvi on tutorial lung data. Differences to full scvi?
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2
|
130
|
January 9, 2024
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Trajectory analysis of combined single-cell and single-nuclei data
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0
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178
|
December 13, 2023
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scVI integration with all genes
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0
|
205
|
December 5, 2023
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Suggestion on parameters for training scvi model
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3
|
520
|
December 4, 2023
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Questions about scib weight choice
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0
|
128
|
December 5, 2023
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WNN neighborhood graph construction failing
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0
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131
|
December 1, 2023
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Compatibility between scVI and SCENIC
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|
10
|
416
|
November 28, 2023
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Error in Fine-tuning scANVI Hyperparameters from Pretrained scVI Model
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2
|
234
|
November 20, 2023
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