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N_samples ( refers to Monte Carlo sampling for each cell) setting in totalVI
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1
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53
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June 28, 2024
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Failing to import SCVI-tools modules: has AnnDatasetFromAnnData been replaced?
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2
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37
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June 27, 2024
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Integration of Multiple Multiome Datasets
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5
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491
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March 6, 2024
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Help on MultiVI for data modality
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0
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125
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February 29, 2024
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Questions about scib weight choice
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0
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183
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December 5, 2023
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Vae_q.latent_space_classifer_ not found in totalVI CITE-seq reference mapping tutorial
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3
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197
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November 20, 2023
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Multi-omics scANVI
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1
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183
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November 14, 2023
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RuntimeWarning: The lr scheduler dict contains the key(s)
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0
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221
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October 23, 2023
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How to properly save and load a TotalVI trained model that's based on mudata?
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1
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564
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September 7, 2023
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TypeError when trying to set up scvi.model.TOTALVI()
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2
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322
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August 29, 2023
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Increase number of CPU cores for vae.train() in scvi?
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3
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667
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August 28, 2023
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Debugging Issue for CITE-seq analysis with totalVI juytper notebook tutorial
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6
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312
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June 21, 2023
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Totalvi failing to write an h5mu objecy
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7
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275
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May 10, 2023
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Dataset integration and analysis
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3
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710
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May 3, 2023
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totalVI, peakVI, multiVI with scRNA-seq and scATAC-seq data
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3
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679
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March 9, 2023
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3 sets of CITE-Seq data, how to concatenate or make single file for further analysis?
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0
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424
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February 7, 2023
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multiVI and totalVI modal integration question
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0
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422
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September 15, 2022
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TotalVI log normalization and non-negativity
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4
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427
|
September 11, 2022
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Error in scvi.model.TOTALVI.setup_anndata when loading protein-only data
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5
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643
|
August 25, 2022
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Advice regarding complex multimodal integration/analysis strategy
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0
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362
|
July 28, 2022
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The totalVI DE test; gene names
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2
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360
|
May 24, 2022
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ScArches-TotalVI reproducibility
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15
|
725
|
May 19, 2022
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TotalVI- ADT filtering and zero value markers
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0
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346
|
April 26, 2022
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All genes or highly variable genes?
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10
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2749
|
March 31, 2022
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Regressing out isotype controls
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3
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687
|
March 24, 2022
|
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Loading external CITE-seq anndata with argument `mask_protein_batches`?
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1
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374
|
March 11, 2022
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totalVI tutorial of integration of CITE-seq datasets in R
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2
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474
|
February 15, 2022
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TotalVI probabilistic model
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4
|
518
|
November 4, 2021
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Differentially expressed genes between two Leiden clusters
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8
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1031
|
October 15, 2021
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Comparing steps of Scanpy for scRNQ-seq and totalvi for CITE-seq
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6
|
681
|
October 8, 2021
|