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How to load the AKOYA(CODEX) processor pipeline outputs a csv files for Squidpy?
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4
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738
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June 27, 2023
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Generate cell expression from latent space directly
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2
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676
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June 26, 2023
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Using categorical_covariate_keys when sampling or generating normalised expression
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6
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1059
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June 26, 2023
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Scanpy matrixplot dendrogram by both axes
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0
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283
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June 23, 2023
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Composing transformations
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1
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229
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June 22, 2023
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Can I aggregate images and data by shapes?
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3
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293
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June 22, 2023
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Reorder dendrogram/heatmap for pl.rank_genes_groups_heatmap
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0
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401
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June 22, 2023
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Community Meeting 2023-06-27 18.00 CEST
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0
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245
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June 22, 2023
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Debugging Issue for CITE-seq analysis with totalVI juytper notebook tutorial
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6
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337
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June 21, 2023
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Obtain pixel grid from scanpy.pl.spatial
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0
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304
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June 21, 2023
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COMPASS Installation tutorial - CPLEX Installation
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0
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276
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June 19, 2023
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How to randomize plotting order of cells in sc.pl.umap
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0
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502
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June 17, 2023
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AttributeError: 'DataSplitter' object has no attribute '_has_setup_TrainerFn.FITTING'
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4
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1206
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June 16, 2023
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Show cluster numbers on scanpy UMAP plot like in Featureplot in Seurat
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5
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2634
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June 16, 2023
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How can I know the Harmony package version when using .external.pp.harmony_integrate?
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0
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223
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June 16, 2023
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New core members
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0
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287
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June 16, 2023
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How to add additional metadata on multiple different single cell RNA files from different experiments, such as organ, sample number etc
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1
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950
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June 8, 2022
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How to add metadata from csv file to concatenated anndata object?
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0
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1112
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June 15, 2023
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Scvi-tools label transfer accuracy
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2
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512
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June 15, 2023
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Debugging Issue for Introduction to scvi-tools juytper notebook tutorial
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0
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430
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June 13, 2023
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Not sure if scvi is using my GPU or not
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7
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1153
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June 13, 2023
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CellAssign speed up
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2
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422
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June 13, 2023
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Oddly high amount of clusters during subcluster analysis using Leiden
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0
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491
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June 12, 2023
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404 Not Found Link in "Introduction to scvi-tools" walkthrough
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1
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193
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June 12, 2023
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Scverse community meetings
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6
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781
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June 12, 2023
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Get input corpus form AmortizedLDA model
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3
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259
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June 7, 2023
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Struggling on under standing the parameter when clustering and cell type annotation. Also confused on normalization method
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0
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569
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June 6, 2023
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Validation loss lower than the training loss in scvi
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7
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1198
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June 7, 2023
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How to change the category order in `ir.pl.group_abundance` stacked barplot column
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0
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297
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June 5, 2023
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Using pearson residuals for differential gene analysis
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0
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484
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June 5, 2023
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