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MERFISH data analysis from scratch
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2
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680
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June 4, 2023
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How to use lvm-DE
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3
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439
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June 2, 2023
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How to match all sizes of spatial plots within a subplot
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0
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365
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June 2, 2023
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Rank_genes_groups_dotplot do not display legend color
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0
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222
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May 30, 2023
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Clustering with scVI latent space
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1
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453
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May 26, 2023
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Current status of dask support (and on disk sparse arrays)
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1
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646
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May 25, 2023
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Add new gene/var to scanpy object
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0
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314
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May 25, 2023
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HVG selection 'flavors'
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1
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248
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May 25, 2023
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sq.pl.spatial_segment( TypeError: 'collection'
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1
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538
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May 24, 2023
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Spatial Segment TypeError
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1
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643
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May 24, 2023
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Help concatenating var for cite seq
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2
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616
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May 24, 2023
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Read_10x_h5 Error
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1
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782
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May 23, 2023
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Reading in data with scanpy.read_10x_mtx gives back KeyError:1 when features.tsv contains only one column (gene symbols) and ValueError when adding 2 columns (gene ids and feature types)(
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0
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855
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May 17, 2023
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Interpretation of fold-changes in differential expression analysis
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2
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507
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May 17, 2023
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DE analysis with model.SCVI: which lfc indicates gene up-/down-regulation?
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2
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917
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September 15, 2022
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Spatialdata status
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2
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352
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May 16, 2023
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Plotting spatialdata in only one coordinate system
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2
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351
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May 15, 2023
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Is it acceptable practice to correct cell labels based on UMAP coordinates?
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0
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271
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May 12, 2023
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Extract cell name from scvi dataset
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2
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221
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May 11, 2023
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Using scVI-integrated data for scVelo and CellRank analysis - what embeddings to supply for velocity?
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3
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586
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May 11, 2023
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Scanorama embeddings on CellRank analysis
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0
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338
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May 11, 2023
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FCLayers bias' gradient set to 0
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2
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234
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May 10, 2023
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Topic modelling or factorization on integrated scRNA-seq data?
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0
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317
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May 10, 2023
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Understanding the GPU related warning while setting up SCVI
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1
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2728
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May 10, 2023
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Totalvi failing to write an h5mu objecy
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7
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279
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May 10, 2023
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Community meeting 2023-05-16 18:00 CEST
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0
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288
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May 9, 2023
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Gpu advices for new computer
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4
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258
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May 9, 2023
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I want to draw dendrogram on both x and y axes in scanpy's sc.pl .dotplot
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0
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564
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May 9, 2023
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Violin plot - subset vs. all cells
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0
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438
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May 8, 2023
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Failed to import scanpy on jupyter notebook
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0
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421
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May 8, 2023
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