Topics tagged integration

Topic	Replies	Views	Activity
Re-integration after subseting cluster scvi-tools integration , scvi	2	307	September 26, 2023
Sequential scArches scvi-tools integration , scvi , scarches	0	190	September 24, 2023
How to best integrate Genomic Variant Information muon developer , integration	1	192	August 16, 2023
Missing pre-processed dataset in h5ad format (scanorama tutorial) scanpy integration	0	196	August 8, 2023
Sparse matrix error using totalVI integration scvi-tools integration	1	259	August 4, 2023
How to setseed in R? scvi-tools integration , scvi	0	175	July 31, 2023
Could not find function "scvi.model.SCVI.setup_anndata" scvi-tools integration , scvi , scrna-seq	0	293	July 29, 2023
How to find HVG in Seurat-integrated data? scanpy integration	1	411	July 27, 2023
Bar plot using muon between scRNA-seq and scTCR-seq&scBCR-seq? scirpy integration	4	249	July 6, 2023
"ValueError: cannot specify integer `bins` when input data contains infinity" in multi sample data scanpy multivi , integration	6	2537	June 27, 2023
Can I aggregate images and data by shapes? spatialdata integration	3	197	June 22, 2023
COMPASS Installation tutorial - CPLEX Installation General integration , developer	0	220	June 19, 2023
Not sure if scvi is using my GPU or not scRNA-seq integration , scvi	7	748	June 13, 2023
Validation loss lower than the training loss in scvi scvi-tools integration , scvi	7	779	June 7, 2023
Scanorama embeddings on CellRank analysis cellrank integration	0	257	May 11, 2023
scArches with multiple covariates scvi-tools scarches , integration , scvi	3	421	May 5, 2023
Dataset integration and analysis scvi-tools totalvi , scvi , integration , multivi , cellassign	3	585	May 3, 2023
Choosing a Batch Key scvi-tools integration , scvi	2	610	April 18, 2023
Muon function mofa.plot_factors muon integration	2	270	April 18, 2023
scRNA data integration General integration	0	277	April 6, 2023
Muon: multiple set of data comparative analysis muon integration	2	487	February 21, 2023
scVI access the model scvi-tools scvi , integration , developer	4	351	February 9, 2023
3 sets of CITE-Seq data, how to concatenate or make single file for further analysis? muon integration , scanvi , totalvi , multivi , diff-exp	0	332	February 7, 2023
Working with CellRanger Aggregated Data Help integration	1	359	February 4, 2023
Multiple training sets with scVI? scvi-tools integration , scvi	1	331	January 20, 2023
inferCNVpy after running scVI with batch as key Help integration , scvi	3	507	January 11, 2023
Is it possible to do second round integration via X_normalized_scVI normalized counts? scvi-tools scvi , integration	0	314	January 5, 2023
Anndata.concatenate() with two 10x multiome datasets? anndata multivi , integration	2	477	December 29, 2022
DE between conditions in a cluster scvi-tools diff-exp , scvi , integration	4	423	December 14, 2022
How to concatenate anndata properly? anndata scvi , scrna-seq , integration	2	4994	November 3, 2022