|
AttributeError: module 'jax' has no attribute 'Device'
|
|
9
|
3623
|
January 31, 2024
|
|
Problem with airr data loading
|
|
11
|
405
|
October 3, 2023
|
|
Compatibility between scVI and SCENIC
|
|
10
|
411
|
November 28, 2023
|
|
Incorporating augmentations (per batch) for scVI training
|
|
11
|
233
|
February 28, 2024
|
|
Using my own datasets with spatialData
|
|
9
|
120
|
February 8, 2024
|
|
Current status of dask support (and on disk sparse arrays)
|
|
1
|
409
|
May 25, 2023
|
|
Error when draw UMAP: object has no attribute 'get_cmap'
|
|
4
|
2346
|
September 5, 2023
|
|
Anndata 0.10 released!
|
|
0
|
536
|
October 9, 2023
|
|
How to concatenate spatial AnnData objects
|
|
4
|
658
|
August 15, 2023
|
|
Tensor nan error when training scANVI model
|
|
0
|
443
|
August 11, 2023
|
|
ModuleNotFoundErrror: no module named "importlib.metadata"
|
|
4
|
815
|
February 15, 2024
|
|
How to interpret the latent space in scVI
|
|
6
|
451
|
March 5, 2024
|
|
Enviroment.yml file? scvi installation problems
|
|
8
|
638
|
October 11, 2023
|
|
AttributeError: 'DataSplitter' object has no attribute '_has_setup_TrainerFn.FITTING'
|
|
4
|
831
|
June 16, 2023
|
|
Error when saving adata with adata.write_h5ad(): "Above error raised while writing key 'names' of to /"
|
|
2
|
1068
|
December 3, 2023
|
|
Using categorical_covariate_keys when sampling or generating normalised expression
|
|
6
|
736
|
June 26, 2023
|
|
Import scvi error
|
|
0
|
295
|
July 25, 2023
|
|
Imaging data from seurat to scanpy
|
|
1
|
654
|
October 4, 2023
|
|
Error message cannot import name 'set_verbosity' from 'scvi._settings' when importing scvi
|
|
6
|
724
|
October 9, 2023
|
|
Error when training model on M3 Max MPS
|
|
5
|
580
|
February 16, 2024
|
|
Interpreting scirpy's ir_dist_aa_alignment distances
|
|
1
|
203
|
August 22, 2023
|
|
Visium normalization best practices
|
|
2
|
427
|
November 28, 2023
|
|
SOLO/scVI .train() error related to batch_size?
|
|
3
|
699
|
April 3, 2024
|
|
Different DEG results after loading .h5ad
|
|
0
|
227
|
August 19, 2023
|
|
Community Meeting 2023-10-31 18:00 CET
|
|
0
|
256
|
October 26, 2023
|
|
New core members
|
|
0
|
237
|
June 16, 2023
|
|
Cell-Cell Interactions
|
|
0
|
232
|
July 5, 2023
|
|
Batch correction using scvI on multiple datasets + hyperparameter tuning of an scvI model
|
|
1
|
140
|
February 16, 2024
|
|
scVI integration using two batch keys
|
|
5
|
503
|
October 24, 2023
|
|
Unexpected Effect of Augmentations on scVI Batch Integration
|
|
0
|
255
|
March 2, 2024
|
|
Increase scVI integration speed
|
|
5
|
497
|
October 24, 2023
|
|
Differential expression analysis
|
|
2
|
383
|
August 17, 2023
|
|
Option to plot separate umaps for concatenated datasets
|
|
4
|
269
|
December 27, 2023
|
|
Setting num_workers in DataLoader for improving train performance
|
|
2
|
597
|
November 21, 2023
|
|
MultiVI error on only paired data
|
|
3
|
310
|
December 19, 2023
|
|
Macbook M1 M2 mps acceleration with scVI
|
|
4
|
536
|
February 16, 2024
|
|
CITEsq loading in RNA and ADT data
|
|
4
|
565
|
July 6, 2023
|
|
Community Meeting 2024-02-20
|
|
0
|
204
|
February 13, 2024
|
|
Reloading saved model gives different results
|
|
7
|
201
|
February 20, 2024
|
|
Converting view of a backed anndata object into non-view/non-backed
|
|
2
|
177
|
January 16, 2024
|
|
Suggestion on parameters for training scvi model
|
|
3
|
502
|
December 4, 2023
|
|
How to install solo-sc or use hashsolo from scvi?
|
|
4
|
482
|
September 11, 2023
|
|
Error with import scvi
|
|
2
|
535
|
September 7, 2023
|
|
Loading an scVI model from a pytorch lightning checkpoint
|
|
3
|
544
|
August 29, 2023
|
|
Problem in PerformanceWarning
|
|
1
|
650
|
June 30, 2023
|
|
Increase number of CPU cores for vae.train() in scvi?
|
|
3
|
490
|
August 28, 2023
|
|
Integration of Multiple Multiome Datasets
|
|
5
|
393
|
March 6, 2024
|
|
Pertpy: AttributeError: module 'pertpy.plot' has no attribute 'coda'
|
|
4
|
369
|
November 23, 2023
|
|
How to get dot values from `sc.pl.dotplot()`?
|
|
1
|
183
|
March 1, 2024
|
|
Release: scvi-tools 1.1.0
|
|
0
|
133
|
February 13, 2024
|